SMRT Portal

SMRT Portal is the web interface to PacBio software. It makes running all the protocols quite easy with a nice GUI.

Most of the analysis for PacBio requires a lot of processing power and RAM so we have set up servers on the eMedLab cloud computing cluster. To access the web portal you should first connect to the eMedLab VPN:

  1. Launch Cisco Anyconnect and log in with the following credentials:
    1. Username - jphelan
    2. Group - group-14
    3. Password - ask Jody
  2. Go to the adress http://ip-address:8080/smrtportal using one of the following as the IP adress:
    1. 10.2.214.100
    2. 10.2.214.98
    3. 10.2.214.97
    4. 10.2.214.96
    5. 10.2.214.95
  3. Sign in using the following credentials:
    1. Username - administrator
    2. Password - _1administrator
  4. Start analysing!

The jobs for PacBio typically take a long time so try to spread out your analysis over the five different machines.

Documentation for the protocols can be found here: https://github.com/PacificBiosciences/SMRT-Analysis/wiki

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